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UGENE 1.5.2      

Size:  11.55MB

License:   FREE

Publisher:  Publisher | Listed Programs

Release Date:   2009-10-27

Submit Date:

OS:  Windows XP/Vista

Downloads:   4030

Popularity:   Popularity:0/10


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Software Product Description

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UGENE is a free cross-platform genome analysis suite.

Main features:

  • Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
  • HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
  • PCR Primers design using Primer 3;
  • Protein secondary structure prediction using GOR IV and PSIPRED;
  • Search for restriction enzymes and integration with REBASE;
  • Extremely fast repeat finder;
  • Search for transcription factor binding sites using SITECON;
  • ORF finder;
  • Complete Smith-Waterman algorithm implementation.

User Interface:

  • Visual and interactive genome browsing;
  • Chromatograms visualization;
  • 3D viewer for files in PDB and MMDB formats;
  • Multiple sequence alignment editor;
  • Easy to use workflow designer for custom computational workflows.

High performance computing in UGENE:

  • Complete support of modern multicore processors and SSE instructions;
  • Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
  • Integrated solutions for Cell Broadband Engine;
  • Private solutions for supercomputers and distributed computing.

Cooperation:

  • Can be used for education in schools and universities;
  • Features to be included into the next release are initiated by users;
  • UGENE team is ready for collaboration in related projects, both free or commercial
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